Novikova Polina

Novikova Polina - Group leader @ Ecological genomics

43. Autopolyploidy exacerbates dominance masking under negative frequency-dependent selection : evidence from sporophytic self-incompatibility inArabidopsis arenosaandA. lyrata

Xavier Vekemans, Uliana Kolesnikova, Jakub Vlcek, Mathieu Genete, Adrien Dufour, Rowan Welti, Céline Poux, Vincent Castric, Filip Kolar, Polina Novikova

(2025) -

DOI
42. Identification of a gene conferring broad-spectrum orthotospovirus resistance in Solanaceae

Jiongjiong Chen, Hanhui Kuang, Polina Yu. Novikova, Xiaorong Tao, Min Zhu, Yong Liu, Chongkun Zuo, Cheng Yuan, Jianmin Zeng, Haiqin Yu, Zhijun Tong, Xueyi Sui, Changjun Huang, Jie Wang, Weishu Fan, Yi Xu

(2025) - Science Advances

DOI
41. Autopolyploidy exacerbates dominance masking under negative frequency-dependent selection: evidence from sporophytic self-incompatibility in Arabidopsis arenosa and A. lyrata

Vekemans, Xavier, Kolesnikova, Uliana, Vlcek, Jakub, Genete, Mathieu, Dufour, Adrien, Welti, Rowan, Poux, Celine, Castric, Vincent, Kolar, Filip, Novikova, Polina Yu

(2025) - bioRxiv

DOI
40. Life-history trade-offs explain local adaptation in Arabidopsis thaliana

Brachi, Benjamin, Filiault, Danièle L, Pisupati, Rahul, Dahan-Meir, Tal, Igolkina, Anna, Anastasio, Alison, Box, Mathew S, Duncan, Susan, Karasov, Talia L, Kerdaffrec, Envel, others

(2025) - bioRxiv

DOI
39. Multiple autopolyploid Arabidopsis lyrata populations stabilized by long-range adaptive introgression across Eurasia

Scott, Alison D, Kolesnikova, Uliana, Glushkevich, Anna, Steinmann, Laura, Tikhomirov, Nikita, Pfordt, Ursula, Bohut́ınská, Magdalena, Burns, Robin, Seregin, Alexey P, Kolar, Filip, others

(2025) - Molecular Biology and Evolution

DOI
38. Copy Number Variation: A Substrate for Plant Adaptation and Stress Response in Arabidopsis

Karunarathne, Piyal, Schaefer, Yannick, Glushkevich, Anna, Scott, Alison, Abraham, Leen, de Meaux, Juliette, Novikova, Polina Yu, Wiehe, Thomas, Rose, Laura E

(2025) - bioRxiv

DOI
37. Polyploid genome assembly ofCardamine chenopodiifolia

Aurélia Emonet, Mohamed Awad, Nikita Tikhomirov, Maria Vasilarou, Miguel Pérez-Antón, Xiangchao Gan, Polina Novikova, Angela Hay

(2024) -

DOI
36. Polyploid genome assembly of Cardamine chenopodiifolia

Aurélia Emonet, Mohamed Awad, Nikita Tikhomirov, Maria Vasilarou, Miguel Pérez-Antón, Xiangchao Gan, Polina Yu. Novikova, Angela Hay

(2024) - Gigabyte

DOI
35. Diploid origins and early genome stabilization in the allotetraploid Arabidopsis suecica

Robin Burns, Anna Glushkevich, Aboli Kulkarni, Uliana K Kolesnikova, Filip Kolář, Alison Dawn Scott, Polina Yu. Novikova

(2024) -

DOI
34. Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment

Ma, Xiao, Vanneste, Steffen, Chang, Jiyang, Ambrosino, Luca, Barry, Kerrie, Bayer, Till, Bobrov, Alexander A, Boston, LoriBeth, Campbell, Justin E, Chen, Hengchi, others

(2024) - Nature Plants

DOI
33. Diploid origins, adaptation to polyploidy, and the beginning of rediploidization in allotetraploid Arabidopsis suecica

Burns, Robin, Kulkarni, Aboli, Glushkevich, Anna, Kolesnikova, Uliana K, Kolář, Filip, Scott, Alison Dawn, Novikova, Polina Yu

(2024) - bioRxiv

DOI
32. Polyploid genome assembly of Cardamine chenopodiifolia

Emonet, Aurélia, Awad, Mohamed, Tikhomirov, Nikita, Vasilarou, Maria, Pérez-Antón, Miguel, Gan, Xiangchao, Novikova, Polina Yu, Hay, Angela

(2024) - Gigabyte

DOI
31. Ancestral self-compatibility facilitates the establishment of allopolyploids in Brassicaceae

Polina Yu. Novikova, Uliana K. Kolesnikova, Alison Dawn Scott

(2023) - Plant Reproduction

DOI
30. Long‐read sequencing in ecology and evolution: Understanding how complex genetic and epigenetic variants shape biodiversity

Dan G. Bock, Jianquan Liu, Polina Novikova, Loren H. Rieseberg

(2023) - Molecular Ecology

DOI
29. Long-read sequencing in ecology and evolution: Understanding how complex genetic and epigenetic variants shape biodiversity

Bock, Dan G, Liu, Jianquan, Novikova, Polina, Rieseberg, Loren H

(2023) - Molecular Ecology

DOI
28. Inference of polyploid origin and inheritance mode from population genomic data

Scott, Alison Dawn, Van de Velde, Jozefien D, Novikova, Polina Yu

(2023) - Polyploidy: Methods and Protocols

DOI
27. Cycles of satellite and transposon evolution in Arabidopsis centromeres

Wlodzimierz, Piotr, Rabanal, Fernando A, Burns, Robin, Naish, Matthew, Primetis, Elias, Scott, Alison, Mandáková, Terezie, Gorringe, Nicola, Tock, Andrew J, Holland, Daniel, others

(2023) - Nature

DOI
26. Ancestral self-compatibility facilitates the establishment of allopolyploids in Brassicaceae

Novikova, Polina Yu, Kolesnikova, Uliana K, Scott, Alison Dawn

(2023) - Plant Reproduction

DOI
25. Transition to self-compatibility associated with dominant S-allele in a diploid Siberian progenitor of allotetraploid Arabidopsis kamchatica revealed by Arabidopsis lyrata genomes

Kolesnikova, Uliana K, Scott, Alison Dawn, Van de Velde, Jozefien D, Burns, Robin, Tikhomirov, Nikita P, Pfordt, Ursula, Clarke, Andrew C, Yant, Levi, Seregin, Alexey P, Vekemans, Xavier, others

(2023) - Molecular Biology and Evolution

DOI
24. SNP Detection in Pinus pinaster Transcriptome and Association with Resistance to Pinewood Nematode

Inês Modesto, Vera Inácio, Polina Novikova, Isabel Carrasquinho, Yves Van de Peer, Célia M. Miguel

(2022) - Forests

DOI
23. Plant genetic effects on microbial hubs impact host fitness in repeated field trials

Brachi, Benjamin, Filiault, Daniele, Whitehurst, Hannah, Darme, Paul, Le Gars, Pierre, Le Mentec, Marine, Morton, Timothy C, Kerdaffrec, Envel, Rabanal, Fernando, Anastasio, Alison, others

(2022) - Proceedings of the National Academy of Sciences of the United States of America

DOI
22. SNP Detection in Pinus pinaster Transcriptome and Association with Resistance to Pinewood Nematode

Modesto, In̂es, Inácio, Vera, Novikova, Polina, Carrasquinho, Isabel, Van de Peer, Yves, Miguel, Célia M

(2022) - Forests

DOI
21. Inference of polyploid origin and inheritance mode from population genomic data

Alison Dawn Scott, Jozefien D. Van de Velde, Polina Yu. Novikova

(2021) -

DOI
20. Gradual evolution of allopolyploidy in Arabidopsis suecica

Robin Burns, Terezie Mandáková, Joanna Gunis, Luz Mayela Soto-Jiménez, Chang Liu, Martin A. Lysak, Polina Yu. Novikova, Magnus Nordborg

(2021) - Nature Ecology & Evolution

DOI
19. Gradual evolution of allopolyploidy in Arabidopsis suecica

Burns, Robin, Mandáková, Terezie, Gunis, Joanna, Soto-Jiménez, Luz Mayela, Liu, Chang, Lysak, Martin A, Novikova, Polina Yu, Nordborg, Magnus

(2021) - Nature ecology & evolution

DOI
18. Parallel adaptation to climate above the 35th parallel

Robin Burns, Polina Yu. Novikova

(2020) - Molecular Ecology

DOI
17. Gradual evolution of allopolyploidy inArabidopsis suecica

Robin Burns, Terezie Mandáková, Joanna Gunis, Luz Mayela Soto-Jiménez, Chang Liu, Martin A. Lysak, Polina Yu. Novikova, Magnus Nordborg

(2020) -

DOI
16. Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus

Polina Yu. Novikova, Rodney Mauricio, Ian G. Brennan, William Booker, Michael Mahony, Paul Doughty, Alan R. Lemmon, Emily Moriarty Lemmon, J. Dale Roberts, Levi Yant, Yves Van de Peer, J. Scott Keogh, Stephen C. Donnellan

(2020) - PLOS Genetics

DOI
15. Parallel adaptation to climate above the 35th parallel

Burns, Robin, Novikova, Polina Yu

(2020) - Molecular Ecology

DOI
14. Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus

Novikova, Polina Yu, Brennan, Ian G, Booker, William, Mahony, Michael, Doughty, Paul, Lemmon, Alan R, Lemmon, Emily Moriarty, Roberts, J Dale, Yant, Levi, Van de Peer, Yves, others

(2020) - PLoS Genetics

DOI
13. Whole genome duplication potentiates inter-specific hybridisation and niche shifts in Australian burrowing frogs Neobatrachus

Polina Yu. Novikova, Ian G. Brennan, William Booker, Michael Mahony, Paul Doughty, Alan R. Lemmon, Emily Moriarty Lemmon, Levi Yant, Yves Van de Peer, J. Scott Keogh, Stephen C. Donnellan

(2019) -

DOI
12. Multiple Independent Recruitment of Sodefrin Precursor-Like Factors in Anuran Sexually Dimorphic Glands

Bossuyt, Franky, Schulte, Lisa M, Maex, Margo, Janssenswillen, Sunita, Novikova, Polina Yu, Biju, SD, Van de Peer, Yves, Matthijs, Severine, Roelants, Kim, Martel, An, others

(2019) - Molecular biology and evolution

DOI
11. Genome of Crucihimalaya himalaica, a close relative of Arabidopsis, shows ecological adaptation to high altitude

Zhang, Ticao, Qiao, Qin, Novikova, Polina Yu, Wang, Qia, Yue, Jipei, Guan, Yanlong, Ming, Shengping, Liu, Tianmeng, De, Ji, Liu, Yixuan, others

(2019) - Proceedings of the National Academy of Sciences

DOI
10. Polyploid Arabidopsis species originated around recent glaciation maxima

Novikova, Polina Yu, Hohmann, Nora, Van de Peer, Yves

(2018) - Current Opinion in Plant Biology

DOI
9. Genome sequencing reveals the origin of the allotetraploid Arabidopsis suecica

Novikova, Polina Yu, Tsuchimatsu, Takashi, Simon, Samson, Nizhynska, Viktoria, Voronin, Viktor, Burns, Robin, Fedorenko, Olga M, Holm, Svante, Säll, Torbjörn, Prat, Elisa, others

(2017) - Molecular Biology and Evolution

DOI
8. On the post-glacial spread of human commensal Arabidopsis thaliana

Lee, Cheng-Ruei, Svardal, Hannes, Farlow, Ashley, Exposito-Alonso, Moises, Ding, Wei, Novikova, Polina, Alonso-Blanco, Carlos, Weigel, Detlef, Nordborg, Magnus

(2017) - Nature Communications

DOI
7. Unstable inheritance of 45S rRNA genes in Arabidopsis thaliana

Rabanal, Fernando A, Nizhynska, Viktoria, Mandáková, Terezie, Novikova, Polina Yu, Lysak, Martin A, Mott, Richard, Nordborg, Magnus

(2017) - G3: Genes, Genomes, Genetics

DOI
6. The footprint of polygenic adaptation on stress-responsive cis-regulatory divergence in the Arabidopsis genus

He, Fei, Arce, Agustin L, Schmitz, Gregor, Koornneef, Maarten, Novikova, Polina, Beyer, Andreas, de Meaux, Juliette

(2016) - Molecular biology and evolution

DOI
5. Epigenomic diversity in a global collection of Arabidopsis thaliana accessions

Kawakatsu, Taiji, Huang, Shao-shan Carol, Jupe, Florian, Sasaki, Eriko, Schmitz, Robert J, Urich, Mark A, Castanon, Rosa, Nery, Joseph R, Barragan, Cesar, He, Yupeng, others

(2016) - Cell

DOI
4. Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism

Novikova, Polina Yu, Hohmann, Nora, Nizhynska, Viktoria, Tsuchimatsu, Takashi, Ali, Jamshaid, Muir, Graham, Guggisberg, Alessia, Paape, Tim, Schmid, Karl, Fedorenko, Olga M, others

(2016) - Nature genetics

DOI
3. 1,135 genomes reveal the global pattern of polymorphism in Arabidopsis thaliana

Alonso-Blanco, Carlos, Andrade, Jorge, Becker, Claude, Bemm, Felix, Bergelson, Joy, Borgwardt, Karsten M, Cao, Jun, Chae, Eunyoung, Dezwaan, Todd M, Ding, Wei, others

(2016) - Cell

DOI
2. Exogenous selection rather than cytonuclear incompatibilities shapes asymmetrical fitness of reciprocal Arabidopsis hybrids

Muir, Graham, Ruiz-Duarte, Paola, Hohmann, Nora, Mable, Barbara K, Novikova, Polina, Schmickl, Roswitha, Guggisberg, Alessia, Koch, Marcus A

(2015) - Ecology and evolution

DOI
1. Molecular modeling of the reactive configuration of peroxidized lipid and $α$-tocopherol in the membrane

Novikova, P Yu, Krasilnikov, PM

(2009) - Biophysics

DOI